Submitted SNP(ss) Details: ss2086848

Submitted SNP(ss) Details: ss2086848

Submitter
Handle	TSC-CSHL
Submitter SNP ID	TSC0225636
RefSNP(rs#)	rs1318936
Submitted Batch ID	001018_18
Submitted Date	Oct 19, 2000
Publication Cited	N.D.
First entry to dbSNP	Oct 19 2000 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TSC-WUGSC-1-2
Ascertainment Samplesize	10
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATATATGCAA TGATGCACTA AAGACTCTCA TTTCTCTCCT GGTTAAGAAC TACAATGGCA
 CCAATAGACC AAATCAAGCC TACATTCTCA TTGCTCTTTC GACGACTTGC GTGCACTC
 R
 GTGCACCAAT GTGTGTAGCC CATTGCTCCT AGCACACTCC TGACCTATCC GGCACCGTGT
 CCACACACCA CTCCCTCCTT CTACCTGCCC CAGATACCCC TTCTACACTC TGCCATCCAA
 ATCACATCGG AACCCTATAA TCTATAAACC TGTCTTAAAC AGTCTTACAA TATTATTCCA
 ATCTATCAGA AAACTTAGCT GTTCCTTAAG TCCTATTTCA CATGTAATTT TTAAAGTTTT
 AAGAGTATAT TTTATCATCT TTTTTGTATA TATTTGAGGC TTGTGACTAT GCTTTTTTAA
 AAATTAATGT TTATGTTTAA TCGCTCATAA TGGCTTAAGC TTACTAGGCT TGTAGTAAAT
 ATTCAACAGA TATTTTAACT GATTAATATT ACTTAGCAAA AGGTTAACTC TGACTGGGTT
 GCATACCTTA GTATTCCAGA GAGCAGAAGA CTCTGACAAA TGTGTTTATT GGTTGAGAAC
 TAACCTTCAA GGCCAT

Submitted Frequency for ss2086848

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.64999998	A=0.34999999	0.455 +/-0.030			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss2086848

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.60176992	A=0.39823008	A/G=0.46017700 G/G=0.37168142 A/A=0.16814159	Pr(chiSq=0.180,df=1) =0.752	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	G=0.54651165	A=0.45348838	A/G=0.44186047 G/G=0.32558140 A/A=0.23255815	Pr(chiSq=0.507,df=1) =0.479	Genotype Freq.
HapMap-JPT	172	172	G=0.59883720	A=0.40116280	A/G=0.45348838 G/G=0.37209302 A/A=0.17441860	Pr(chiSq=0.271,df=1) =0.655	Genotype Freq.
HapMap-YRI	226	226	G=0.93362832	A=0.06637168	G/G=0.86725664 A/G=0.13274336	Pr(chiSq=0.073,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	G=0.87755102	A=0.12244898	G/G=0.75510204 A/G=0.24489796	Pr(chiSq=0.219,df=1) =0.655	Genotype Freq.
HAPMAP-CHB	82	82	G=0.53658539	A=0.46341464	A/G=0.58536583 G/G=0.24390244 A/A=0.17073171	Pr(chiSq=1.285,df=1) =0.273	Genotype Freq.
HAPMAP-CHD	170	170	G=0.61176473	A=0.38823530	A/G=0.42352942 G/G=0.40000001 A/A=0.17647059	Pr(chiSq=0.999,df=1) =0.343	Genotype Freq.
HAPMAP-GIH	176	176	G=0.63636363	A=0.36363637	A/G=0.47727272 G/G=0.39772728 A/A=0.12500000	Pr(chiSq=0.086,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	180	180	G=0.88333333	A=0.11666667	G/G=0.78888887 A/G=0.18888889 A/A=0.02222222	Pr(chiSq=0.628,df=1) =0.439	Genotype Freq.
HAPMAP-MEX	100	100	G=0.73000002	A=0.27000001	G/G=0.51999998 A/G=0.41999999 A/A=0.06000000	Pr(chiSq=0.214,df=1) =0.655	Genotype Freq.
HAPMAP-MKK	282	282	G=0.82269502	A=0.17730497	G/G=0.68085104 A/G=0.28368795 A/A=0.03546099	Pr(chiSq=0.107,df=1) =0.752	Genotype Freq.
HAPMAP-TSI	176	176	G=0.62500000	A=0.37500000	A/G=0.52272725 G/G=0.36363637 A/A=0.11363637	Pr(chiSq=1.167,df=1) =0.294	Genotype Freq.

Submitted individual genotype for ss2086848

There is no individual genotype data for ss2086848.

Disclaimer Privacy statement