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Submitted SNP(ss) Details: ss28532229           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-000570
RefSNP(rs#)rs17885120
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532229|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 CACAGTCTGG TTTTTTTTTT TGAGATGGAG TCTCACTCTG TTGCCAGGCT AGAGTGCAGT
 GGCGCGATCT CGGCTCACTG CAACCTCCGC CTCCGGGTTC AAGCAATTCT CCTGCCTCAG
 CCTCCAGAGT AGCTGGGACT ACAGGCGCGT GACAACATGC CCGGCTACTT TTTGTACTTT
 TAGTAGAGAC GGGGTTTCAC CATGTTGGCC AGAATGGTCT GGATCTCTTG ACCTCGTGAT
 CCGCCCGCCT CGGCC
 K
 CCCAAAGTGG TAGGATTACA GGCGTAAGCC ACCGTACCCG GCCAGTCTGG GGTCTTTTAA
 AAATACAGAC CCGGGGCTGG GCGCGGTGGC CCATGCCTGT AATCCCAGCA CTTTGGGAGA
 CCGAGGCGGG CGGATCACTT GAGGTCAGGA GTTCGAGACC AGCCTGGCCA ACATGGTGAA
 ACCCGTCTCT ACTAAAAGTA CAAAAATTAG CCAGGCGTTG TGGCAGGCGC CTGTAATCCC
 AGCTACTTGG GAGGC

  Submitted Frequency for ss28532229 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180T=0.98888898
G=0.01111100
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532229 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180T=0.98888886
G=0.01111111T/T=0.97777778
G/T=0.02222222
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532229 back to top
There is no individual genotype data for ss28532229.

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