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Submitted SNP(ss) Details: ss28532230           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-000933
RefSNP(rs#)rs17884009
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize164
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532230|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GCACTTTGGG AGACCGAGGC GGGCGGATCA CTTGAGGTCA GGAGTTCGAG ACCAGCCTGG
 CCAACATGGT GAAACCCGTC TCTACTAAAA GTACAAAAAT TAGCCAGGCG TTGTGGCAGG
 CGCCTGTAAT CCCAGCTACT TGGGAGGCTG AAGCAGGAGA ATCGCTTGAA CCTGGGAGGC
 GTGATCGTGC CACTGTACTC CAGCCTGGGC GACAGAGCGA GGCTCTATCT CAAAACAAAC
 AAACAAAAAA ACCCC
 M
 CACACACACA CAAAAAACAA AAAACAGGCC GGTGCAGTAG CTCACTCCAC TTTGAGAGGC
 CAAGGCGGAA AGACAGCTTG AACCCCACAG TTGAGACCGG CCTGGGCAAC ATGGCAAGAC
 TCCGTCTCTA CCCAAAAAAA AAAAAAAAAA AAAAGGGCCG GGCGTGGTGG GTGTGCCTGT
 GGTCCCAGAT ACTCAGGAGA CTGAGATGGG AGGATCCCTT GAGCCCAGGA GTTCCAGGCG
 GCAGTGAGCC GTGTT

  Submitted Frequency for ss28532230 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90164A=0.90853697
C=0.09146300
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532230 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90164164A=0.90853661
C=0.09146342A/A=0.82926828
A/C=0.15853658
C/C=0.01219512
Pr(chiSq=0.174,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss28532230 back to top
There is no individual genotype data for ss28532230.

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