NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss28532231           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001127
RefSNP(rs#)rs17883777
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532231|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GTACTCCAGC CTGGGCGACA GAGCGAGGCT CTATCTCAAA ACAAACAAAC AAAAAAACCC
 CACACACACA CACAAAAAAC AAAAAACAGG CCGGTGCAGT AGCTCACTCC ACTTTGAGAG
 GCCAAGGCGG AAAGACAGCT TGAACCCCAC AGTTGAGACC GGCCTGGGCA ACATGGCAAG
 ACTCCGTCTC TACCCAAAAA AAAAAAAAAA AAAAAAGGGC CGGGCGTGGT GGGTGTGCCT
 GTGGTCCCAG ATACT
 Y
 AGGAGACTGA GATGGGAGGA TCCCTTGAGC CCAGGAGTTC CAGGCGGCAG TGAGCCGTGT
 TCGCGCCACT GCACTCCAGC CTGGGTGACA GAGCAAGAAT ATGTCTCAAA AAACAAACAA
 ACAAAAAAAG GCACATAACC ACGATCTACC CTCGTAAAAC GTTTCCAGAG CGTCCCAGCG
 GTGCCCCTCA TCATCTGGCG GCCCCTACGC CTCTCTGAGA CTCACAGACC TACTCCCCTC
 TCCAGGGGGC GGAGC

  Submitted Frequency for ss28532231 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90174C=0.99425298
T=0.00574700
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532231 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90174174C=0.99425286
T=0.00574713C/C=0.98850572
C/T=0.01149425
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532231 back to top
There is no individual genotype data for ss28532231.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement