NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss28532232           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001253
RefSNP(rs#)rs17879849
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532232|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GCGGAAAGAC AGCTTGAACC CCACAGTTGA GACCGGCCTG GGCAACATGG CAAGACTCCG
 TCTCTACCCA AAAAAAAAAA AAAAAAAAAA GGGCCGGGCG TGGTGGGTGT GCCTGTGGTC
 CCAGATACTC AGGAGACTGA GATGGGAGGA TCCCTTGAGC CCAGGAGTTC CAGGCGGCAG
 TGAGCCGTGT TCGCGCCACT GCACTCCAGC CTGGGTGACA GAGCAAGAAT ATGTCTCAAA
 AAACAAACAA ACAAA
 M
 AAAGGCACAT AACCACGATC TACCCTCGTA AAACGTTTCC AGAGCGTCCC AGCGGTGCCC
 CTCATCATCT GGCGGCCCCT ACGCCTCTCT GAGACTCACA GACCTACTCC CCTCTCCAGG
 GGGCGGAGCC CACACCGCTG AGCATTTACT CTTGTTCTTC CCTCTGCCAG GGGCACCGTT
 CTACCCCTTT CTGCCTGGAG AAACTGCCGT TTTTCCTTAA AGGATCCTCG AAGCCGGAAG
 GAGCAGCCAC CTCCC

  Submitted Frequency for ss28532232 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90178A=0.97752798
C=0.02247200
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532232 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90178178A=0.97752810
C=0.02247191A/A=0.96629214
A/C=0.02247191
C/C=0.01123596
Pr(chiSq=21.239,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss28532232 back to top
There is no individual genotype data for ss28532232.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement