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Submitted SNP(ss) Details: ss28532233           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001403
RefSNP(rs#)rs887316
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532233|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TCCCTTGAGC CCAGGAGTTC CAGGCGGCAG TGAGCCGTGT TCGCGCCACT GCACTCCAGC
 CTGGGTGACA GAGCAAGAAT ATGTCTCAAA AAACAAACAA ACAAAAAAAG GCACATAACC
 ACGATCTACC CTCGTAAAAC GTTTCCAGAG CGTCCCAGCG GTGCCCCTCA TCATCTGGCG
 GCCCCTACGC CTCTCTGAGA CTCACAGACC TACTCCCCTC TCCAGGGGGC GGAGCCCACA
 CCGCTGAGCA TTTAC
 Y
 CTTGTTCTTC CCTCTGCCAG GGGCACCGTT CTACCCCTTT CTGCCTGGAG AAACTGCCGT
 TTTTCCTTAA AGGATCCTCG AAGCCGGAAG GAGCAGCCAC CTCCCACTCC CGGCTGCTGC
 AAGCAAGCTG CTTTGACTTC TTTCTAGAGT TGGGGATTGC TGCTGGAGTC CGAGTCTCAG
 GCCCAGAGTG GGTGCGATGG TCTTGCTTGC ACCCTGTATC CCCCGGCAGA CGCCCGGGAA
 CTCTACTAAG TGGGT

  Submitted Frequency for ss28532233 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90178T=0.87640500
C=0.12359600
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532233 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90178178T=0.87640452
C=0.12359551T/T=0.82022470
C/T=0.11235955
C/C=0.06741573
Pr(chiSq=20.621,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss28532233 back to top
There is no individual genotype data for ss28532233.

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