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Submitted SNP(ss) Details: ss28532234           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001689
RefSNP(rs#)rs17885764
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed Allele-/CTCCGA
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532234|allelePos=256|len=511|taxid=9606|alleles='-/CTCCGA'|mol=Genomic
 CTACCCCTTT CTGCCTGGAG AAACTGCCGT TTTTCCTTAA AGGATCCTCG AAGCCGGAAG
 GAGCAGCCAC CTCCCACTCC CGGCTGCTGC AAGCAAGCTG CTTTGACTTC TTTCTAGAGT
 TGGGGATTGC TGCTGGAGTC CGAGTCTCAG GCCCAGAGTG GGTGCGATGG TCTTGCTTGC
 ACCCTGTATC CCCCGGCAGA CGCCCGGGAA CTCTACTAAG TGGGTGACCC CAGAGAGCTC
 GCCCCCACAC TCCGA
 N
 GTCCAGCACT CGGTCCACTG CACAGGGACC TCGCGCCCCA CAGCTGCGTC CTCTCTGACC
 TTCGCAATCC GGTGCGCGGC CCGCGGAACG CCCCGATCTC CAGGGGCACG GAAGGCCGAG
 GCGTGCCGGG GGAGCCAGGA GCAGCTGGCT GGCGGGCGCC GCGGGCCTCC CCGGTCACGT
 GACACCCCGG ACAACGTGCG CCGTCACGTG ACGGCAGAGC CTGTGAGCGT TTTTCTCACG
 TGACGGAGGC GCCTG

  Submitted Frequency for ss28532234 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180CTCCGA=0.98888898
-=0.01111100
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532234 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180CTCCGA=0.98888886
-=0.01111111CTCCGA/CTCCGA=0.97777778
-/CTCCGA=0.02222222
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532234 back to top
There is no individual genotype data for ss28532234.

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