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Submitted SNP(ss) Details: ss28532235           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001812
RefSNP(rs#)rs17880138
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532235|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GGATTGCTGC TGGAGTCCGA GTCTCAGGCC CAGAGTGGGT GCGATGGTCT TGCTTGCACC
 CTGTATCCCC CGGCAGACGC CCGGGAACTC TACTAAGTGG GTGACCCCAG AGAGCTCGCC
 CCCACACTCC GACTCCGAGT CCAGCACTCG GTCCACTGCA CAGGGACCTC GCGCCCCACA
 GCTGCGTCCT CTCTGACCTT CGCAATCCGG TGCGCGGCCC GCGGAACGCC CCGATCTCCA
 GGGGCACGGA AGGCC
 R
 AGGCGTGCCG GGGGAGCCAG GAGCAGCTGG CTGGCGGGCG CCGCGGGCCT CCCCGGTCAC
 GTGACACCCC GGACAACGTG CGCCGTCACG TGACGGCAGA GCCTGTGAGC GTTTTTCTCA
 CGTGACGGAG GCGCCTGCAC GTGGACCAAT GGGGAGGCGG GGGCGGGGGC GGGGCCGGCA
 GGGGCGGTGC GCGGGAAGGG ACCCCGGACC CGGAGGTCGC GGAGAGCTGG GCAGTGTTGG
 CCGCTGGCGG AGAGC

  Submitted Frequency for ss28532235 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180G=0.87222201
A=0.12777799
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532235 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180G=0.87222224
A=0.12777779G/G=0.81111109
A/G=0.12222222
A/A=0.06666667
Pr(chiSq=18.361,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss28532235 back to top
There is no individual genotype data for ss28532235.

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