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Submitted SNP(ss) Details: ss28532236           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001903
RefSNP(rs#)rs887317
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532236|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 ACTAAGTGGG TGACCCCAGA GAGCTCGCCC CCACACTCCG ACTCCGAGTC CAGCACTCGG
 TCCACTGCAC AGGGACCTCG CGCCCCACAG CTGCGTCCTC TCTGACCTTC GCAATCCGGT
 GCGCGGCCCG CGGAACGCCC CGATCTCCAG GGGCACGGAA GGCCGAGGCG TGCCGGGGGA
 GCCAGGAGCA GCTGGCTGGC GGGCGCCGCG GGCCTCCCCG GTCACGTGAC ACCCCGGACA
 ACGTGCGCCG TCACG
 Y
 GACGGCAGAG CCTGTGAGCG TTTTTCTCAC GTGACGGAGG CGCCTGCACG TGGACCAATG
 GGGAGGCGGG GGCGGGGGCG GGGCCGGCAG GGGCGGTGCG CGGGAAGGGA CCCCGGACCC
 GGAGGTCGCG GAGAGCTGGG CAGTGTTGGC CGCTGGCGGA GAGCTGGGCA GTGTTGGCCG
 CTGGCGGAGC GCTGGGGCAG CATGAAGTGC CTGGTCACGG GCGGCAACGT GAAGGGTGAG
 TGCAGGTCGG CCTGG

  Submitted Frequency for ss28532236 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180T=0.99444401
C=0.00555600
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532236 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180T=0.99444443
C=0.00555556T/T=0.98888886
C/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532236 back to top
There is no individual genotype data for ss28532236.

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