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Submitted SNP(ss) Details: ss28532237           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-001981
RefSNP(rs#)rs17882486
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed Allele-/GCGGGG
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532237|allelePos=256|len=511|taxid=9606|alleles='-/GCGGGG'|mol=Genomic
 CGCGCCCCAC AGCTGCGTCC TCTCTGACCT TCGCAATCCG GTGCGCGGCC CGCGGAACGC
 CCCGATCTCC AGGGGCACGG AAGGCCGAGG CGTGCCGGGG GAGCCAGGAG CAGCTGGCTG
 GCGGGCGCCG CGGGCCTCCC CGGTCACGTG ACACCCCGGA CAACGTGCGC CGTCACGTGA
 CGGCAGAGCC TGTGAGCGTT TTTCTCACGT GACGGAGGCG CCTGCACGTG GACCAATGGG
 GAGGCGGGGG CGGGG
 N
 CCGGCAGGGG CGGTGCGCGG GAAGGGACCC CGGACCCGGA GGTCGCGGAG AGCTGGGCAG
 TGTTGGCCGC TGGCGGAGAG CTGGGCAGTG TTGGCCGCTG GCGGAGCGCT GGGGCAGCAT
 GAAGTGCCTG GTCACGGGCG GCAACGTGAA GGGTGAGTGC AGGTCGGCCT GGCAGCGGCG
 GTGCAGCAGC CGCGGAGCCG CCAGCCTAAC CCCCTTCCGC TCTTCTCCCC GCAGTGCTCG
 GCAAGGCCGT CCACT

  Submitted Frequency for ss28532237 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178-=0.97752798
GCGGGG=0.02247200
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532237 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178-=0.97752810
GCGGGG=0.02247191-/-=0.95505619
-/GCGGGG=0.04494382
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532237 back to top
There is no individual genotype data for ss28532237.

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