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Submitted SNP(ss) Details: ss28532238           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002005
RefSNP(rs#)rs17883242
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532238|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 TGACCTTCGC AATCCGGTGC GCGGCCCGCG GAACGCCCCG ATCTCCAGGG GCACGGAAGG
 CCGAGGCGTG CCGGGGGAGC CAGGAGCAGC TGGCTGGCGG GCGCCGCGGG CCTCCCCGGT
 CACGTGACAC CCCGGACAAC GTGCGCCGTC ACGTGACGGC AGAGCCTGTG AGCGTTTTTC
 TCACGTGACG GAGGCGCCTG CACGTGGACC AATGGGGAGG CGGGGGCGGG GGCGGGGCCG
 GCAGGGGCGG TGCGC
 K
 GGAAGGGACC CCGGACCCGG AGGTCGCGGA GAGCTGGGCA GTGTTGGCCG CTGGCGGAGA
 GCTGGGCAGT GTTGGCCGCT GGCGGAGCGC TGGGGCAGCA TGAAGTGCCT GGTCACGGGC
 GGCAACGTGA AGGGTGAGTG CAGGTCGGCC TGGCAGCGGC GGTGCAGCAG CCGCGGAGCC
 GCCAGCCTAA CCCCCTTCCG CTCTTCTCCC CGCAGTGCTC GGCAAGGCCG TCCACTCCCT
 GTCCCGCATC GGGGA

  Submitted Frequency for ss28532238 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180G=0.99444401
T=0.00555600
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532238 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180G=0.99444443
T=0.00555556G/G=0.98888886
G/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532238 back to top
There is no individual genotype data for ss28532238.

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