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Submitted SNP(ss) Details: ss28532239           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002065
RefSNP(rs#)rs17882966
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize152
PopulationPDR90
Allele
Observed Allele-/AGCTGGGCAGTGTTGGCCGCTGGCGGAG
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532239|allelePos=256|len=511|taxid=9606|alleles='-/AGCTGGGCAGTGTTGGCCGCTGGCGGAG'|mol=Genomic
 CCGAGGCGTG CCGGGGGAGC CAGGAGCAGC TGGCTGGCGG GCGCCGCGGG CCTCCCCGGT
 CACGTGACAC CCCGGACAAC GTGCGCCGTC ACGTGACGGC AGAGCCTGTG AGCGTTTTTC
 TCACGTGACG GAGGCGCCTG CACGTGGACC AATGGGGAGG CGGGGGCGGG GGCGGGGCCG
 GCAGGGGCGG TGCGCGGGAA GGGACCCCGG ACCCGGAGGT CGCGGAGAGC TGGGCAGTGT
 TGGCCGCTGG CGGAG
 N
 CGCTGGGGCA GCATGAAGTG CCTGGTCACG GGCGGCAACG TGAAGGGTGA GTGCAGGTCG
 GCCTGGCAGC GGCGGTGCAG CAGCCGCGGA GCCGCCAGCC TAACCCCCTT CCGCTCTTCT
 CCCCGCAGTG CTCGGCAAGG CCGTCCACTC CCTGTCCCGC ATCGGGGACG AGCTCTACCT
 GGAACCCTTG GAGGACGGGG TGAGGGGCTA GGGTGTGGGG GGCGGGTGGG ACTCCAGCCG
 GGAGCGGGTA ACCCG

  Submitted Frequency for ss28532239 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90152-=0.99342102
AGCTGGGCAGTGTTGGCCGCTGGCGGAG=0.00657900
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532239 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90152152-=0.99342108
AGCTGGGCAGTGTTGGCCGCTGGCGGAG=0.00657895-/-=0.98684210
-/AGCTGGGCAGTGTTGGCCGCTGGCGGAG=0.01315789
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532239 back to top
There is no individual genotype data for ss28532239.

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