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Submitted SNP(ss) Details: ss28532241           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002191
RefSNP(rs#)rs11575914
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532241|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 GACGGAGGCG CCTGCACGTG GACCAATGGG GAGGCGGGGG CGGGGGCGGG GCCGGCAGGG
 GCGGTGCGCG GGAAGGGACC CCGGACCCGG AGGTCGCGGA GAGCTGGGCA GTGTTGGCCG
 CTGGCGGAGA GCTGGGCAGT GTTGGCCGCT GGCGGAGCGC TGGGGCAGCA TGAAGTGCCT
 GGTCACGGGC GGCAACGTGA AGGGTGAGTG CAGGTCGGCC TGGCAGCGGC GGTGCAGCAG
 CCGCGGAGCC GCCAG
 M
 CTAACCCCCT TCCGCTCTTC TCCCCGCAGT GCTCGGCAAG GCCGTCCACT CCCTGTCCCG
 CATCGGGGAC GAGCTCTACC TGGAACCCTT GGAGGACGGG GTGAGGGGCT AGGGTGTGGG
 GGGCGGGTGG GACTCCAGCC GGGAGCGGGT AACCCGGACT AGAGTCTCGC CCCCACTAGG
 CGGGATGACC GCTGGCAGAT TTGTCGGCAA AGTTTCAGTT TCTTAGTCTG GCGGCTGTCA
 TCTTCCCAGG CCGGT

  Submitted Frequency for ss28532241 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180C=0.97222197
A=0.02777800
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532241 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180C=0.97222221
A=0.02777778C/C=0.94444442
A/C=0.05555556
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532241 back to top
There is no individual genotype data for ss28532241.

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