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Submitted SNP(ss) Details: ss28532242           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002436
RefSNP(rs#)rs17878505
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532242|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GAGCCGCCAG CCTAACCCCC TTCCGCTCTT CTCCCCGCAG TGCTCGGCAA GGCCGTCCAC
 TCCCTGTCCC GCATCGGGGA CGAGCTCTAC CTGGAACCCT TGGAGGACGG GGTGAGGGGC
 TAGGGTGTGG GGGGCGGGTG GGACTCCAGC CGGGAGCGGG TAACCCGGAC TAGAGTCTCG
 CCCCCACTAG GCGGGATGAC CGCTGGCAGA TTTGTCGGCA AAGTTTCAGT TTCTTAGTCT
 GGCGGCTGTC ATCTT
 Y
 CCAGGCCGGT GTGTGAATTG AGGAAAGCTG TCCTGCGAGC TCCCAGGGGG TGACGTGCAC
 TTAGAGAAAC TCGGGGAAGG CCTGGGTGTG CGACCCCTCC TCTGCGGCAG CAGCGCCGGG
 GCCGACTCTG AAGGCTTCCA TGGGGAAAGG AGGGTTTTTC AGCAGGTGGT GGCGGAGCGG
 GAGGACGATA GGGCAAGTGT GTGAGCAGAA GCAGCCAGAG GGCTGGGTCT GTGGCTGCCC
 CCTGACCACG TCCCT

  Submitted Frequency for ss28532242 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90158C=0.98734200
T=0.01265800
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532242 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90158158C=0.98734176
T=0.01265823C/C=0.97468352
C/T=0.02531646
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD162162C=0.99382716
T=0.00617284C/C=0.98765433
C/T=0.01234568
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI170170C=0.98235291
T=0.01764706C/C=0.96470588
C/T=0.03529412
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-GIH174174C=0.99425286
T=0.00574713C/C=0.98850572
C/T=0.01149425
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-CEU214214C=0.99532712
T=0.00467290C/C=0.99065423
C/T=0.00934579
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532242 back to top
There is no individual genotype data for ss28532242.

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