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Submitted SNP(ss) Details: ss28532244           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002874
RefSNP(rs#)rs2066491
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize158
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532244|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGACGATAGG GCAAGTGTGT GAGCAGAAGC AGCCAGAGGG CTGGGTCTGT GGCTGCCCCC
 TGACCACGTC CCTCTCCCTG CTCTTCGTGG CCCAGCTCTC CCTCCGGACG GTGAACTCCT
 CCCGCTCTGC CTATGCCTGC TTTCTCTTTG CCCCGCTCTT CTTCCAGCAA TACCAGGCAG
 CCACCCCTGG TCAGGACCTG CTGCGCTGTA AGATCCTGAT GAAGGTGAGG CCCTTCCCTC
 AGCAGTGGCA CTACT
 Y
 CACCCCAGGA ATCTCCACCA GCTGTGCCTC TGCCCTGGGG TACTCAGTAG ATGCTAAGTG
 GGGAGAGAGA CACGTGCAAG CCCAATCCAT GCAAAACACA GGGAGGGCCA TGGTAAAAGC
 ATCACAGCGG GGACCTGAGA GGGTGGTGAC GCTCAAGTTC GTCAAGAAAG GTAAGCACGT
 CTTTTGGCCG GGCGCGGTGG CTCACGCCTG TAATCCCAGC ACTTTGGGAG GCCGAGGCAG
 GCGGATCACG AGGTC

  Submitted Frequency for ss28532244 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90158C=0.95569599
T=0.04430400
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532244 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90158158C=0.95569623
T=0.04430380C/C=0.91139239
C/T=0.08860759
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532244 back to top
There is no individual genotype data for ss28532244.

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