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Submitted SNP(ss) Details: ss28532245           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002910
RefSNP(rs#)rs1624816
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532245|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 AGGGCTGGGT CTGTGGCTGC CCCCTGACCA CGTCCCTCTC CCTGCTCTTC GTGGCCCAGC
 TCTCCCTCCG GACGGTGAAC TCCTCCCGCT CTGCCTATGC CTGCTTTCTC TTTGCCCCGC
 TCTTCTTCCA GCAATACCAG GCAGCCACCC CTGGTCAGGA CCTGCTGCGC TGTAAGATCC
 TGATGAAGGT GAGGCCCTTC CCTCAGCAGT GGCACTACTC CACCCCAGGA ATCTCCACCA
 GCTGTGCCTC TGCCC
 Y
 GGGGTACTCA GTAGATGCTA AGTGGGGAGA GAGACACGTG CAAGCCCAAT CCATGCAAAA
 CACAGGGAGG GCCATGGTAA AAGCATCACA GCGGGGACCT GAGAGGGTGG TGACGCTCAA
 GTTCGTCAAG AAAGGTAAGC ACGTCTTTTG GCCGGGCGCG GTGGCTCACG CCTGTAATCC
 CAGCACTTTG GGAGGCCGAG GCAGGCGGAT CACGAGGTCA GGAGTTCGAG ACCAGCCTGG
 CCAACATGGC GAAAC

  Submitted Frequency for ss28532245 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90174T=0.90804601
C=0.09195400
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532245 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90174174T=0.90804595
C=0.09195402T/T=0.87356323
C/T=0.06896552
C/C=0.05747126
Pr(chiSq=29.980,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss28532245 back to top
There is no individual genotype data for ss28532245.

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