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Submitted SNP(ss) Details: ss28532246           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-002911
RefSNP(rs#)rs11227782
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532246|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GGGCTGGGTC TGTGGCTGCC CCCTGACCAC GTCCCTCTCC CTGCTCTTCG TGGCCCAGCT
 CTCCCTCCGG ACGGTGAACT CCTCCCGCTC TGCCTATGCC TGCTTTCTCT TTGCCCCGCT
 CTTCTTCCAG CAATACCAGG CAGCCACCCC TGGTCAGGAC CTGCTGCGCT GTAAGATCCT
 GATGAAGGTG AGGCCCTTCC CTCAGCAGTG GCACTACTCC ACCCCAGGAA TCTCCACCAG
 CTGTGCCTCT GCCCT
 R
 GGGTACTCAG TAGATGCTAA GTGGGGAGAG AGACACGTGC AAGCCCAATC CATGCAAAAC
 ACAGGGAGGG CCATGGTAAA AGCATCACAG CGGGGACCTG AGAGGGTGGT GACGCTCAAG
 TTCGTCAAGA AAGGTAAGCA CGTCTTTTGG CCGGGCGCGG TGGCTCACGC CTGTAATCCC
 AGCACTTTGG GAGGCCGAGG CAGGCGGATC ACGAGGTCAG GAGTTCGAGA CCAGCCTGGC
 CAACATGGCG AAACC

  Submitted Frequency for ss28532246 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90174G=0.97701198
A=0.02298900
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532246 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90174174G=0.97701150
A=0.02298851G/G=0.95402300
A/G=0.04597701
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532246 back to top
There is no individual genotype data for ss28532246.

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