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Submitted SNP(ss) Details: ss28532247           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-003160
RefSNP(rs#)rs17884022
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532247|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGCCCTGGGG TACTCAGTAG ATGCTAAGTG GGGAGAGAGA CACGTGCAAG CCCAATCCAT
 GCAAAACACA GGGAGGGCCA TGGTAAAAGC ATCACAGCGG GGACCTGAGA GGGTGGTGAC
 GCTCAAGTTC GTCAAGAAAG GTAAGCACGT CTTTTGGCCG GGCGCGGTGG CTCACGCCTG
 TAATCCCAGC ACTTTGGGAG GCCGAGGCAG GCGGATCACG AGGTCAGGAG TTCGAGACCA
 GCCTGGCCAA CATGG
 Y
 GAAACCCCGT CTCTACTAAA AATACAAAAA TTAGCTGGGC GTGGTGGCAC GCGCCTGTAA
 TCCCAGCTAC TCGGGAGGCT GAGGCAGGAG AATTGCTTGA ATCCGGGAGG TGGAGGTTGC
 AGTGAGCTGA GATCGCACCA CTGCACTCCA GCCTGGGTGA CAGAGCGAGA CTCCATCTCA
 AAAAAAAAAA AAAAAAAGGT AAGCAGGTCT TTCAAGGCAT TCCAAGCATA AGGAAGAGCA
 TGAATGAGGC CTAGA

  Submitted Frequency for ss28532247 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180C=0.87222201
T=0.12777799
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532247 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180C=0.87222224
T=0.12777779C/C=0.81111109
C/T=0.12222222
T/T=0.06666667
Pr(chiSq=18.361,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss28532247 back to top
There is no individual genotype data for ss28532247.

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