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Submitted SNP(ss) Details: ss28532249           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-003522
RefSNP(rs#)rs2066490
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532249|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GAGGTGGAGG TTGCAGTGAG CTGAGATCGC ACCACTGCAC TCCAGCCTGG GTGACAGAGC
 GAGACTCCAT CTCAAAAAAA AAAAAAAAAA AGGTAAGCAG GTCTTTCAAG GCATTCCAAG
 CATAAGGAAG AGCATGAATG AGGCCTAGAA GGATGCCAGT GCCCGAGGTG ACGTGGGAGC
 CCTTTTCCCA GAGTTACATG CTGGGCCCAT GATGGGTGTG GGCCTGCATG GGACAGGAGA
 GCTTGTTGCA GAGAT
 R
 TGATGCTAGG CTGAGGTGTC TTATCCCATG CAGTCTTTCC TGTCTGTCTT CCGCTCACTG
 GCGATGCTGG AGAAGACGGT GGAAAAATGC TGCATCTCCC TGAATGGCCG GAGCAGCCGC
 CTGGTGGTCC AGCTGCATTG CAAGTTCGGT GAGTGGGCAG CCGGCCAGCC AAGGGGTGCC
 TCAGCAGGGA GGTCGGCGAG GCCCACTGAG ACCCTATCGC CCATCCAGGG GTGCGGAAGA
 CTCACAACCT GTCCT

  Submitted Frequency for ss28532249 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180G=0.93888903
A=0.06111100
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532249 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180G=0.93888891
A=0.06111111G/G=0.87777776
A/G=0.12222222
Pr(chiSq=0.045,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532249 back to top
There is no individual genotype data for ss28532249.

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