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Submitted SNP(ss) Details: ss28532250           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-003550
RefSNP(rs#)rs2066496
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532250|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GCACCACTGC ACTCCAGCCT GGGTGACAGA GCGAGACTCC ATCTCAAAAA AAAAAAAAAA
 AAAGGTAAGC AGGTCTTTCA AGGCATTCCA AGCATAAGGA AGAGCATGAA TGAGGCCTAG
 AAGGATGCCA GTGCCCGAGG TGACGTGGGA GCCCTTTTCC CAGAGTTACA TGCTGGGCCC
 ATGATGGGTG TGGGCCTGCA TGGGACAGGA GAGCTTGTTG CAGAGATGTG ATGCTAGGCT
 GAGGTGTCTT ATCCC
 R
 TGCAGTCTTT CCTGTCTGTC TTCCGCTCAC TGGCGATGCT GGAGAAGACG GTGGAAAAAT
 GCTGCATCTC CCTGAATGGC CGGAGCAGCC GCCTGGTGGT CCAGCTGCAT TGCAAGTTCG
 GTGAGTGGGC AGCCGGCCAG CCAAGGGGTG CCTCAGCAGG GAGGTCGGCG AGGCCCACTG
 AGACCCTATC GCCCATCCAG GGGTGCGGAA GACTCACAAC CTGTCCTTCC AGGACTGTGA
 GTCCCTGCAG GCCGT

  Submitted Frequency for ss28532250 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180A=0.85000002
G=0.15000001
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532250 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180A=0.85000002
G=0.15000001A/A=0.75555557
A/G=0.18888889
G/G=0.05555556
Pr(chiSq=6.049,df=1)
=0.020
Genotype
Freq.

  Submitted individual genotype for ss28532250 back to top
There is no individual genotype data for ss28532250.

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