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Submitted SNP(ss) Details: ss28532251           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-003619
RefSNP(rs#)rs2066492
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532251|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 CAGGTCTTTC AAGGCATTCC AAGCATAAGG AAGAGCATGA ATGAGGCCTA GAAGGATGCC
 AGTGCCCGAG GTGACGTGGG AGCCCTTTTC CCAGAGTTAC ATGCTGGGCC CATGATGGGT
 GTGGGCCTGC ATGGGACAGG AGAGCTTGTT GCAGAGATGT GATGCTAGGC TGAGGTGTCT
 TATCCCATGC AGTCTTTCCT GTCTGTCTTC CGCTCACTGG CGATGCTGGA GAAGACGGTG
 GAAAAATGCT GCATC
 K
 CCCTGAATGG CCGGAGCAGC CGCCTGGTGG TCCAGCTGCA TTGCAAGTTC GGTGAGTGGG
 CAGCCGGCCA GCCAAGGGGT GCCTCAGCAG GGAGGTCGGC GAGGCCCACT GAGACCCTAT
 CGCCCATCCA GGGGTGCGGA AGACTCACAA CCTGTCCTTC CAGGACTGTG AGTCCCTGCA
 GGCCGTCTTC GACCCAGCCT CGTGCCCCCA CATGCTCCGC GCCCCAGCAC GGTGAGCACA
 CCCCTGCCCT CAGCT

  Submitted Frequency for ss28532251 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180T=0.99444401
G=0.00555600
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532251 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HAPMAP-ASW9898T=0.98979592
G=0.01020408T/T=0.97959185
G/T=0.02040816
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
PDR90180180T=0.99444443
G=0.00555556T/T=0.98888886
G/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HAPMAP-MKK286286T=0.99300700
G=0.00699301T/T=0.98601401
G/T=0.01398601
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532251 back to top
There is no individual genotype data for ss28532251.

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