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Submitted SNP(ss) Details: ss28532252           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-003969
RefSNP(rs#)rs17881026
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed Allele-/CA
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532252|allelePos=256|len=511|taxid=9606|alleles='-/CA'|mol=Genomic
 GTCGGCGAGG CCCACTGAGA CCCTATCGCC CATCCAGGGG TGCGGAAGAC TCACAACCTG
 TCCTTCCAGG ACTGTGAGTC CCTGCAGGCC GTCTTCGACC CAGCCTCGTG CCCCCACATG
 CTCCGCGCCC CAGCACGGTG AGCACACCCC TGCCCTCAGC TCAGCCCCGG GTCTCTCTCT
 TCCTTCTTTG GGGCCCCAAG GGGTTGATTT TAGAAGGTAC CTCTTTCATT TTCCCTACAG
 AGTTTCTGTG AACCT
 N
 AAGACATCCC ATGGCCCGCT ATGTGCTCAG GTCCTTACCT GGCTCTTTAA AGGCAGACGG
 TGGCATGGAG GAGGGGCAGG CGCCTCCTTG CTCCATTCTC CTTACTGTTA GGAGCCTGCA
 TTCTCCATCC CAAAGGTCTG ACTTGACTTT CTGGCTGCTC AAACCCATTC CAACTCCTCC
 TCTAGGGAGC ACATTTCTGG CCTGCCACCA AATCTCTTGT CTGGCTTGAG TAACCTTGAA
 GGTCTGCCCA TAACC

  Submitted Frequency for ss28532252 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178CA=0.97752798
-=0.02247200
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532252 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178CA=0.97752810
-=0.02247191CA/CA=0.95505619
-/CA=0.04494382
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss28532252 back to top
There is no individual genotype data for ss28532252.

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