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Submitted SNP(ss) Details: ss28532254           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-004291
RefSNP(rs#)rs17885191
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532254|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGGAGGAGGG GCAGGCGCCT CCTTGCTCCA TTCTCCTTAC TGTTAGGAGC CTGCATTCTC
 CATCCCAAAG GTCTGACTTG ACTTTCTGGC TGCTCAAACC CATTCCAACT CCTCCTCTAG
 GGAGCACATT TCTGGCCTGC CACCAAATCT CTTGTCTGGC TTGAGTAACC TTGAAGGTCT
 GCCCATAACC TGTGGCTCAG AGGCTCAGAC CCCTTCTCCG GCCTGGGCAT CCTTCCAGAG
 GTGTTCCCCA TTCAA
 Y
 GGCAGCCTCT TTTCCTGACT GCCCAGGATC GAGGAGTCCC CAAGGCCAGG GCAGGAGGCT
 GGAGGGAGGC TGAATAATCA GCTATGGGGT GGAGCTGTTC TGGGCAGTCC GAGCACTGGG
 GGCTGTCTGG GGCCAGGGAA ATGGGGACTC CAGTTGAAGC AAACGTCCCT GGCGAGGACC
 AGCTCAGAGA GGAGTGGGCT CTCCCCCTGC TCCATGCTGG TCACTGCTTG CATTCAAGTG
 GCCCAAGGTC CTGCT

  Submitted Frequency for ss28532254 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176C=0.98295498
T=0.01704500
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532254 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176C=0.98295456
T=0.01704546C/C=0.96590906
C/T=0.03409091
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532254 back to top
There is no individual genotype data for ss28532254.

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