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Submitted SNP(ss) Details: ss28532255           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-004896
RefSNP(rs#)rs17887226
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532255|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GAGAGACGGG GGCCAATTCC TTGGTCTGCA TTTAGGGTGG TGTCTTTTTT TTTTTTTTTT
 GAGACAGAGT TTCGCTCTTG TTGCCCAGGC AATGGCACGA TCTCGGCTCA CCACAACCTC
 CGCCTCCCGA TAAAAGTGAT TCTCCTGCCT CAGCCTCCCG AGTAGCTGGG ATTACAGGCA
 TGCGCCACCA TGCCCGGCTA ATTTTTTGTA TTTTTAGTAG AGACAGGGTT TCTCCATGTT
 GGTCAGGCTG GTCTT
 R
 AACTCCCGAC CTCAGGTGAT CTGCCCGTCT CAGCCTCCCA AAGTACTGGG ATTACAGGCG
 TCAGCCACCA CACTCAGTCT CTTTTTTTAA AAATGAGCAA TTGTTTCTCT CGTTTTGTTT
 TGAGATAGAG TCTCGCTCTG TCACCCAGGC TGGAGTGCAG TGGTGCAATC TTGGCTCACT
 GCAATCTCTG CCTCCCGGGT TCAAGCGATT CTCCTGCCTC AGCCTCCCGA GTAGCTGGGA
 TTACAGGCAT GCACC

  Submitted Frequency for ss28532255 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90174G=0.99425298
A=0.00574700
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532255 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90174174G=0.99425286
A=0.00574713G/G=0.98850572
A/G=0.01149425
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532255 back to top
There is no individual genotype data for ss28532255.

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