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Submitted SNP(ss) Details: ss28532257           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-005030
RefSNP(rs#)rs17879043
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532257|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 AGTGATTCTC CTGCCTCAGC CTCCCGAGTA GCTGGGATTA CAGGCATGCG CCACCATGCC
 CGGCTAATTT TTTGTATTTT TAGTAGAGAC AGGGTTTCTC CATGTTGGTC AGGCTGGTCT
 TGAACTCCCG ACCTCAGGTG ATCTGCCCGT CTCAGCCTCC CAAAGTACTG GGATTACAGG
 CGTCAGCCAC CACACTCAGT CTCTTTTTTT AAAAATGAGC AATTGTTTCT CTCGTTTTGT
 TTTGAGATAG AGTCT
 Y
 GCTCTGTCAC CCAGGCTGGA GTGCAGTGGT GCAATCTTGG CTCACTGCAA TCTCTGCCTC
 CCGGGTTCAA GCGATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGATTAC AGGCATGCAC
 CACCACGCCC GGCTAATTTA TATATGTTTA GTAGAGACGA GGTTTCACCA TGTTGGCCAA
 GCTGGTCTCG AACTCCTGAA CTCAAGTGAT CCACTGCTTC GGCCTCCCAA AGTGCTGGGA
 TTACAGGCAT GAGCC

  Submitted Frequency for ss28532257 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90172C=0.98255801
T=0.01744200
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532257 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90172172C=0.98255813
T=0.01744186C/C=0.96511626
C/T=0.03488372
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28532257 back to top
There is no individual genotype data for ss28532257.

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