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Submitted SNP(ss) Details: ss28532258           
Submitter
HandleEGP_SNPS
Submitter SNP IDRAD9A-005176
RefSNP(rs#)rs17878756
Submitted Batch IDRAD9A-PDR90-100104
Submitted DateNov 08, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPNov 8 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28532258|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 CCGTCTCAGC CTCCCAAAGT ACTGGGATTA CAGGCGTCAG CCACCACACT CAGTCTCTTT
 TTTTAAAAAT GAGCAATTGT TTCTCTCGTT TTGTTTTGAG ATAGAGTCTC GCTCTGTCAC
 CCAGGCTGGA GTGCAGTGGT GCAATCTTGG CTCACTGCAA TCTCTGCCTC CCGGGTTCAA
 GCGATTCTCC TGCCTCAGCC TCCCGAGTAG CTGGGATTAC AGGCATGCAC CACCACGCCC
 GGCTAATTTA TATAT
 K
 TTTAGTAGAG ACGAGGTTTC ACCATGTTGG CCAAGCTGGT CTCGAACTCC TGAACTCAAG
 TGATCCACTG CTTCGGCCTC CCAAAGTGCT GGGATTACAG GCATGAGCCA CTGTTTTTTT
 TTAAATCCTT GCGCAGGGGC CTTGCTCATC TTTTGCATGC TTCAGTTTTA GTGTATGTGC
 TGCCGAAGCA AGCACTCTGT CTCATGAATA ATTTCAAATA TATGTAAAAG CAGACGCAGC
 TCCCGTCCCC ACTTG

  Submitted Frequency for ss28532258 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178G=0.91573000
T=0.08427000
RAD9A-PDR90-100104EGP_SNPS


  dbSNP summary of Genotypes for ss28532258 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178G=0.91573036
T=0.08426967G/G=0.84269661
G/T=0.14606741
T/T=0.01123596
Pr(chiSq=0.255,df=1)
=0.655		Genotype
Freq.

  Submitted individual genotype for ss28532258 back to top
There is no individual genotype data for ss28532258.

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