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Submitted SNP(ss) Details: ss2978078           
Submitter
HandleUWGC
Submitter SNP IDhsd17b3-e2-f105
RefSNP(rs#)rs2066481
Submitted Batch IDhsd17b3.1
Submitted DateJan 30, 2001
Publication Cited[1] Gene based polymorphism discovery
First entry to dbSNPJan 30 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodRESEQ_POLYPHRED_CONFIRM
Ascertainment Samplesize78
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec/!t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2978078|allelePos=51|len=101|taxid=9606|alleles='A/C'|mol=Genomic
 GTGAGGGGCT TCAAGGGCGT GGGCTGGAGA CCAAAGGGAT GAACCTTTGG
 M
 GTACTGACTG CCCTGGAGAC TAGGCTTGTG AGAAAACGTG GCCAGTGAGA

  Submitted Frequency for ss2978078 back to top
There is no frequency submission for ss2978078.


  dbSNP summary of Genotypes for ss2978078 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
NIHPDR
NORTH AMERICA
7878A=0.57692307
C=0.42307693A/C=0.74358976
A/A=0.20512821
C/C=0.05128205
Pr(chiSq=10.677,df=1)
=0.003
Genotype
Freq.

  Submitted individual genotype for ss2978078 back to top
There is no individual genotype data for ss2978078.

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