Submitted SNP(ss) Details: ss32469324

Submitted SNP(ss) Details: ss32469324

Submitter
Handle	EGP_SNPS
Submitter SNP ID	SOD1-000161
RefSNP(rs#)	rs17881711
Submitted Batch ID	SOD1-PDR90-120104
Submitted Date	Dec 02, 2004
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Dec 2 2004 12:00:00:000AM

Resource Links
GenBank Accession	AY835629
Submitted Gene Name	SOD1
Submitted Gene ID	6647
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	180
Population	PDR90

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTACCAAATA CAACAGGCAA AACTGCAAAT ATGTATACTT CCTAGAGGAT GATAAAAAAA
 TGTGAATTGT ATTTCTCTGA TAGAGGATGC ATTAGAGTCT GAGGGTCTAA ATAGCGTAAA
 TAATAAATAA GTAAATAAAT CGATAGTAGT GTACTCCAAA
 Y
 GAGGCTGGAA TAGCTTCTAT TGTTGTTTCA CACTGGACTT CAATTAAGTC TCAGTATTTT
 GCCATACTCA ATATTAAGTA CTAGGCTGGA CGTGGTGGCT CATGTCTGTA ATCCCAGCAC
 TTTGGGAGGC CGAGGTGGGT AGATGGCTGG CTTGAGCTCA GGAGTTTGAA ACCAGCCTGG
 GCAACATGGT AAAACCCCAT CTGTACCCAA AATACAAAAA TCAGCCAGGT GTGGTGGCAC
 ATGCCTGTGG TCCCA

Submitted Frequency for ss32469324

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PDR90	180	C=0.99444401	T=0.00555600				SOD1-PDR90-120104	EGP_SNPS

dbSNP summary of Genotypes for ss32469324

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	180	180	C=0.99444443	T=0.00555556	C/C=0.98888886 C/T=0.01111111	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss32469324

There is no individual genotype data for ss32469324.

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