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Submitted SNP(ss) Details: ss32469325           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-000226
RefSNP(rs#)rs17886051
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469325|allelePos=226|len=481|taxid=9606|alleles='C/T'|mol=Genomic
 CTACCAAATA CAACAGGCAA AACTGCAAAT ATGTATACTT CCTAGAGGAT GATAAAAAAA
 TGTGAATTGT ATTTCTCTGA TAGAGGATGC ATTAGAGTCT GAGGGTCTAA ATAGCGTAAA
 TAATAAATAA GTAAATAAAT CGATAGTAGT GTACTCCAAA CGAGGCTGGA ATAGCTTCTA
 TTGTTGTTTC ACACTGGACT TCAATTAAGT CTCAGTATTT TGCCA
 Y
 ACTCAATATT AAGTACTAGG CTGGACGTGG TGGCTCATGT CTGTAATCCC AGCACTTTGG
 GAGGCCGAGG TGGGTAGATG GCTGGCTTGA GCTCAGGAGT TTGAAACCAG CCTGGGCAAC
 ATGGTAAAAC CCCATCTGTA CCCAAAATAC AAAAATCAGC CAGGTGTGGT GGCACATGCC
 TGTGGTCCCA GGTACTTGGG AGGCTGAGGC AGGAGGATGG CTTGAACCCA GGAGGTGGAG
 GCTGCAGTGA GCTAT

  Submitted Frequency for ss32469325 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178T=0.99438202
C=0.00561800
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469325 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178T=0.99438202
C=0.00561798T/T=0.98876405
C/T=0.01123596
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469325 back to top
There is no individual genotype data for ss32469325.

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