NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss32469326           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-000541
RefSNP(rs#)rs17881274
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469326|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGAGGCCGAG GTGGGTAGAT GGCTGGCTTG AGCTCAGGAG TTTGAAACCA GCCTGGGCAA
 CATGGTAAAA CCCCATCTGT ACCCAAAATA CAAAAATCAG CCAGGTGTGG TGGCACATGC
 CTGTGGTCCC AGGTACTTGG GAGGCTGAGG CAGGAGGATG GCTTGAACCC AGGAGGTGGA
 GGCTGCAGTG AGCTATGATG GCGCCACTGC ACTCCAGCCT GGGTGACAGA GCGAGACCCT
 GTCTCAAAAA TCAAA
 Y
 AAACAACCCC CTCGCCCCGG ACAAAAGTAG TTTGCACTAT TTTCTCATTT CACAATATGT
 TTTTGAAATA TTTCCCTTGA AAGGTAAGTC ATATTTATCA TTCCTGTTGT ATGGAGGCAT
 CATAAATTAT TTCACCATTC TACCCTCCTT GAGTGTTGTG GCCTTTAGGC CAGACAAAAA
 CGCAGGTGAT GCCTAGAAGC CAACTAGTTG CCGTTTGGTT ATCTGTAGGG TTGTGGCCTT
 GCCAAACAGG AAAAA

  Submitted Frequency for ss32469326 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180C=0.93333298
T=0.06666700
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469326 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180C=0.93333334
T=0.06666667C/C=0.88888890
C/T=0.08888889
T/T=0.02222222
Pr(chiSq=7.347,df=1)
=0.010
Genotype
Freq.

  Submitted individual genotype for ss32469326 back to top
There is no individual genotype data for ss32469326.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement