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Submitted SNP(ss) Details: ss32469329           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-000894
RefSNP(rs#)rs17882997
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469329|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TCATTCCTGT TGTATGGAGG CATCATAAAT TATTTCACCA TTCTACCCTC CTTGAGTGTT
 GTGGCCTTTA GGCCAGACAA AAACGCAGGT GATGCCTAGA AGCCAACTAG TTGCCGTTTG
 GTTATCTGTA GGGTTGTGGC CTTGCCAAAC AGGAAAAATA TAAAAAGAAT ACCGAATTCT
 GCCAACCAAA TAAGAAACTC TATACTAAGG ACTAAGAAAA TTGCAGGGGA AGAAAAGGTA
 AGTCCCGGGA TTGAG
 R
 TGTAGCGACT TTCTATACCC TCAGAAAACT AAAAAACAAG ACAAAAAAAT GAAAACTACA
 AAAGCATCCA TCTTGGGGCG TCCCAATTGC TGAGTAACAA ATGAGACGCT GTGGCCAAAC
 TCAGTCATAA CTAATGACAT TTCTAGACAA AGTGACTTCA GATTTTCAAA GCGTACCCTG
 TTTACATCAT TTTGCCAATT TCGCGTACTG CAACCGGCGG GCCACGCCCC CGTGAAAAGA
 AGGTTGTTTT CTCCA

  Submitted Frequency for ss32469329 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90180G=0.99444401
A=0.00555600
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469329 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90180180G=0.99444443
A=0.00555556G/G=0.98888886
A/G=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469329 back to top
There is no individual genotype data for ss32469329.

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