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Submitted SNP(ss) Details: ss32469330           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-001183
RefSNP(rs#)rs17883296
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469330|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 AAACAAGACA AAAAAATGAA AACTACAAAA GCATCCATCT TGGGGCGTCC CAATTGCTGA
 GTAACAAATG AGACGCTGTG GCCAAACTCA GTCATAACTA ATGACATTTC TAGACAAAGT
 GACTTCAGAT TTTCAAAGCG TACCCTGTTT ACATCATTTT GCCAATTTCG CGTACTGCAA
 CCGGCGGGCC ACGCCCCCGT GAAAAGAAGG TTGTTTTCTC CACATTTCGG GGTTCTGGAC
 GTTTCCCGGC TGCGG
 K
 GCGGGGGGAG TCTCCGGCGC ACGCGGCCCC TTGGCCCCGC CCCCAGTCAT TCCCGGCCAC
 TCGCGACCCG AGGCTGCCGC AGGGGGCGGG CTGAGCGCGT GCGAGGCGAT TGGTTTGGGG
 CCAGAGTGGG CGAGGCGCGG AGGTCTGGCC TATAAAGTAG TCGCGGAGAC GGGGTGCTGG
 TTTGCGTCGT AGTCTCCTGC AGCGTCTGGG GTTTCCGTTG CAGTCCTCGG AACCAGGACC
 TCGGCGTGGC CTAGC

  Submitted Frequency for ss32469330 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176G=0.99431801
T=0.00568200
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469330 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176G=0.99431819
T=0.00568182G/G=0.98863637
G/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469330 back to top
There is no individual genotype data for ss32469330.

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