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Submitted SNP(ss) Details: ss32469331           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-001288
RefSNP(rs#)rs17878855
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469331|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 ATTTCTAGAC AAAGTGACTT CAGATTTTCA AAGCGTACCC TGTTTACATC ATTTTGCCAA
 TTTCGCGTAC TGCAACCGGC GGGCCACGCC CCCGTGAAAA GAAGGTTGTT TTCTCCACAT
 TTCGGGGTTC TGGACGTTTC CCGGCTGCGG GGCGGGGGGA GTCTCCGGCG CACGCGGCCC
 CTTGGCCCCG CCCCCAGTCA TTCCCGGCCA CTCGCGACCC GAGGCTGCCG CAGGGGGCGG
 GCTGAGCGCG TGCGA
 S
 GCGATTGGTT TGGGGCCAGA GTGGGCGAGG CGCGGAGGTC TGGCCTATAA AGTAGTCGCG
 GAGACGGGGT GCTGGTTTGC GTCGTAGTCT CCTGCAGCGT CTGGGGTTTC CGTTGCAGTC
 CTCGGAACCA GGACCTCGGC GTGGCCTAGC GAGTTATGGC GACGAAGGCC GTGTGCGTGC
 TGAAGGGCGA CGGCCCAGTG CAGGGCATCA TCAATTTCGA GCAGAAGGCA AGGGCTGGGA
 CGGAGGCTTG TTTGC

  Submitted Frequency for ss32469331 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90174G=0.99425298
C=0.00574700
SOD1-PDR90-120104EGP_SNPS
MH-Pune India
- EAST ASIA 		60G=1.00000000
C=0.00000000
2013 MH_PUNE_INDIAZOOLOGY_DEPT_UOP


  dbSNP summary of Genotypes for ss32469331 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90174174G=0.99425286
C=0.00574713G/G=0.98850572
C/G=0.01149425
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469331 back to top
There is no individual genotype data for ss32469331.

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