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Submitted SNP(ss) Details: ss32469332           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-001335
RefSNP(rs#)rs7277748
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469332|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 ATCATTTTGC CAATTTCGCG TACTGCAACC GGCGGGCCAC GCCCCCGTGA AAAGAAGGTT
 GTTTTCTCCA CATTTCGGGG TTCTGGACGT TTCCCGGCTG CGGGGCGGGG GGAGTCTCCG
 GCGCACGCGG CCCCTTGGCC CCGCCCCCAG TCATTCCCGG CCACTCGCGA CCCGAGGCTG
 CCGCAGGGGG CGGGCTGAGC GCGTGCGAGG CGATTGGTTT GGGGCCAGAG TGGGCGAGGC
 GCGGAGGTCT GGCCT
 R
 TAAAGTAGTC GCGGAGACGG GGTGCTGGTT TGCGTCGTAG TCTCCTGCAG CGTCTGGGGT
 TTCCGTTGCA GTCCTCGGAA CCAGGACCTC GGCGTGGCCT AGCGAGTTAT GGCGACGAAG
 GCCGTGTGCG TGCTGAAGGG CGACGGCCCA GTGCAGGGCA TCATCAATTT CGAGCAGAAG
 GCAAGGGCTG GGACGGAGGC TTGTTTGCGA GGCCGCTCCC ACCCGCTCGT CCCCCCGCGC
 ACCTTTGCTA GGAGC

  Submitted Frequency for ss32469332 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
MH-Pune India
EAST ASIA
60A=1.00000000
G=0.00000000
2013 MH_PUNE_INDIAZOOLOGY_DEPT_UOP
PDR90178A=0.97752798
G=0.02247200
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469332 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HAPMAP-ASW9898A=0.84693879
G=0.15306123A/A=0.69387758
A/G=0.30612245
Pr(chiSq=0.452,df=1)
=0.527
Genotype
Freq.
PDR90178178A=0.97752810
G=0.02247191A/A=0.96629214
A/G=0.02247191
G/G=0.01123596
Pr(chiSq=21.239,df=1)
=0.001
Genotype
Freq.
HAPMAP-LWK180180A=0.87777776
G=0.12222222A/A=0.76666665
A/G=0.22222222
G/G=0.01111111
Pr(chiSq=0.115,df=1)
=0.752
Genotype
Freq.
HapMap-YRI226226A=0.83628321
G=0.16371681A/A=0.71681416
A/G=0.23893805
G/G=0.04424779
Pr(chiSq=1.834,df=1)
=0.200
Genotype
Freq.
HAPMAP-MKK286286A=0.93706292
G=0.06293707A/A=0.87412590
A/G=0.12587413
Pr(chiSq=0.079,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469332 back to top
There is no individual genotype data for ss32469332.

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