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Submitted SNP(ss) Details: ss32469333           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-001354
RefSNP(rs#)rs17881581
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469333|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GTACTGCAAC CGGCGGGCCA CGCCCCCGTG AAAAGAAGGT TGTTTTCTCC ACATTTCGGG
 GTTCTGGACG TTTCCCGGCT GCGGGGCGGG GGGAGTCTCC GGCGCACGCG GCCCCTTGGC
 CCCGCCCCCA GTCATTCCCG GCCACTCGCG ACCCGAGGCT GCCGCAGGGG GCGGGCTGAG
 CGCGTGCGAG GCGATTGGTT TGGGGCCAGA GTGGGCGAGG CGCGGAGGTC TGGCCTATAA
 AGTAGTCGCG GAGAC
 R
 GGGTGCTGGT TTGCGTCGTA GTCTCCTGCA GCGTCTGGGG TTTCCGTTGC AGTCCTCGGA
 ACCAGGACCT CGGCGTGGCC TAGCGAGTTA TGGCGACGAA GGCCGTGTGC GTGCTGAAGG
 GCGACGGCCC AGTGCAGGGC ATCATCAATT TCGAGCAGAA GGCAAGGGCT GGGACGGAGG
 CTTGTTTGCG AGGCCGCTCC CACCCGCTCG TCCCCCCGCG CACCTTTGCT AGGAGCGGGT
 CGCCCGCCAG GCCTC

  Submitted Frequency for ss32469333 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
MH-Pune India
- EAST ASIA 		60G=1.00000000
A=0.00000000
2013 MH_PUNE_INDIAZOOLOGY_DEPT_UOP
PDR90178G=0.99438202
A=0.00561800
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469333 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178G=0.99438202
A=0.00561798G/G=0.98876405
A/G=0.01123596
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469333 back to top
There is no individual genotype data for ss32469333.

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