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Submitted SNP(ss) Details: ss32469334           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-001405
RefSNP(rs#)rs17885940
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 2
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469334|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CATTTCGGGG TTCTGGACGT TTCCCGGCTG CGGGGCGGGG GGAGTCTCCG GCGCACGCGG
 CCCCTTGGCC CCGCCCCCAG TCATTCCCGG CCACTCGCGA CCCGAGGCTG CCGCAGGGGG
 CGGGCTGAGC GCGTGCGAGG CGATTGGTTT GGGGCCAGAG TGGGCGAGGC GCGGAGGTCT
 GGCCTATAAA GTAGTCGCGG AGACGGGGTG CTGGTTTGCG TCGTAGTCTC CTGCAGCGTC
 TGGGGTTTCC GTTGC
 R
 GTCCTCGGAA CCAGGACCTC GGCGTGGCCT AGCGAGTTAT GGCGACGAAG GCCGTGTGCG
 TGCTGAAGGG CGACGGCCCA GTGCAGGGCA TCATCAATTT CGAGCAGAAG GCAAGGGCTG
 GGACGGAGGC TTGTTTGCGA GGCCGCTCCC ACCCGCTCGT CCCCCCGCGC ACCTTTGCTA
 GGAGCGGGTC GCCCGCCAGG CCTCGGGGCC GCCCTGGTCC AGCGCCCGGT CCCGGCCCGT
 GCCGCCCGGT CGGTG

  Submitted Frequency for ss32469334 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178A=0.99438202
G=0.00561800
SOD1-PDR90-120104EGP_SNPS
MH-Pune India
- EAST ASIA 		60A=1.00000000
G=0.00000000
2013 MH_PUNE_INDIAZOOLOGY_DEPT_UOP


  dbSNP summary of Genotypes for ss32469334 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178A=0.99438202
G=0.00561798A/A=0.98876405
A/G=0.01123596
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469334 back to top
There is no individual genotype data for ss32469334.

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