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Submitted SNP(ss) Details: ss32469335           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-001648
RefSNP(rs#)rs17881180
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469335|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GGTTTCCGTT GCAGTCCTCG GAACCAGGAC CTCGGCGTGG CCTAGCGAGT TATGGCGACG
 AAGGCCGTGT GCGTGCTGAA GGGCGACGGC CCAGTGCAGG GCATCATCAA TTTCGAGCAG
 AAGGCAAGGG CTGGGACGGA GGCTTGTTTG CGAGGCCGCT CCCACCCGCT CGTCCCCCCG
 CGCACCTTTG CTAGGAGCGG GTCGCCCGCC AGGCCTCGGG GCCGCCCTGG TCCAGCGCCC
 GGTCCCGGCC CGTGC
 Y
 GCCCGGTCGG TGCCTTCGCC CCCAGCGGTG CGGTGCCCAA GTGCTGAGTC ACCGGGCGGG
 CCCGGGCGCG GGGCGTGGGA CCGAGGCCGC CGCGGGGCTG GGCCTGCGCG TGGCGGGAGC
 GCGGGGAGGG ATTGCCGCGG GCCGGGGAGG GGCGGGGGCG GGCGTGCTGC CCTCTGTGGT
 CCTTGGGCCG CCGCCGCGGG TCTGTCGTGG TGCCTGGAGC GGCTGTGCTC GTCCCTTGCT
 TGGCCGTGTT CTCGT

  Submitted Frequency for ss32469335 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176C=0.96590900
T=0.03409100
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469335 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176C=0.96590906
T=0.03409091C/C=0.93181819
C/T=0.06818182
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469335 back to top
There is no individual genotype data for ss32469335.

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