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Submitted SNP(ss) Details: ss32469336           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-002257
RefSNP(rs#)rs17884260
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize168
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469336|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 GCTTTCCGGC TTCAGCGCTC TAGGTCAGGG AGTCTTCGCT TTTGTACAGC TCTAAGGCTA
 GGAATGGTTT TTATATTTTT AAAAGGCTTT GGAAAACAAA AATACGCAAC AGAGACCGTT
 TGTGTGACAC TTTGCAGGGA AGTTTGCTGG CCTCTGTTCT AGGTCATGAT TGGGCTGCAA
 GGGCAGAGAA GGTAGCCTTG AACAGAGGTC CTTTTCCTCC TCCTAAGCTC CGGGAGCCAG
 AGGTTTAACT GACCC
 K
 TTTGGGGATT TTTGAGGGCA GTGATCTTAA CTTTGGGTGC ACAGTTAGCT TATTTGAAGA
 TCTTACTAAA AATACACCAG AGCCCAACCT CCGACCAATT ACATCAAAAC CTGTCCTAGT
 GCAGGGTGAG TATTGCTGTT TTTTGAAAGT TTCCAAAAGT GATTTTGATG TGCACCTACG
 ATTGAGAACT GTCGTTTGAG GACAGTGGGT GGAGTTTCGT ATTTGGAAAT TAGAAGACCT
 GGAGTTTCCA TTACA

  Submitted Frequency for ss32469336 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90168T=0.99404800
G=0.00595200
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469336 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90168168T=0.99404764
G=0.00595238T/T=0.98809522
G/T=0.01190476
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469336 back to top
There is no individual genotype data for ss32469336.

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