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Submitted SNP(ss) Details: ss32469337           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-002349
RefSNP(rs#)rs6650814
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469337|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 AAAACAAAAA TACGCAACAG AGACCGTTTG TGTGACACTT TGCAGGGAAG TTTGCTGGCC
 TCTGTTCTAG GTCATGATTG GGCTGCAAGG GCAGAGAAGG TAGCCTTGAA CAGAGGTCCT
 TTTCCTCCTC CTAAGCTCCG GGAGCCAGAG GTTTAACTGA CCCTTTTGGG GATTTTTGAG
 GGCAGTGATC TTAACTTTGG GTGCACAGTT AGCTTATTTG AAGATCTTAC TAAAAATACA
 CCAGAGCCCA ACCTC
 M
 GACCAATTAC ATCAAAACCT GTCCTAGTGC AGGGTGAGTA TTGCTGTTTT TTGAAAGTTT
 CCAAAAGTGA TTTTGATGTG CACCTACGAT TGAGAACTGT CGTTTGAGGA CAGTGGGTGG
 AGTTTCGTAT TTGGAAATTA GAAGACCTGG AGTTTCCATT ACACCGAATT GGCACTTAAT
 AACTGTTGTC GGAGCATTTC TTAAGCCACA TTTTCGTAAA GTGGCTTTAA AATTGCTCTG
 CCAGTAGGCA GGTTG

  Submitted Frequency for ss32469337 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90172C=0.91860503
A=0.08139500
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469337 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90172172C=0.91860467
A=0.08139535C/C=0.86046511
A/C=0.11627907
A/A=0.02325581
Pr(chiSq=4.255,df=1)
=0.050
Genotype
Freq.

  Submitted individual genotype for ss32469337 back to top
There is no individual genotype data for ss32469337.

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