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Submitted SNP(ss) Details: ss32469339           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-002431
RefSNP(rs#)rs17884040
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469339|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 CTGCAAGGGC AGAGAAGGTA GCCTTGAACA GAGGTCCTTT TCCTCCTCCT AAGCTCCGGG
 AGCCAGAGGT TTAACTGACC CTTTTGGGGA TTTTTGAGGG CAGTGATCTT AACTTTGGGT
 GCACAGTTAG CTTATTTGAA GATCTTACTA AAAATACACC AGAGCCCAAC CTCCGACCAA
 TTACATCAAA ACCTGTCCTA GTGCAGGGTG AGTATTGCTG TTTTTTGAAA GTTTCCAAAA
 GTGATTTTGA TGTGC
 R
 CCTACGATTG AGAACTGTCG TTTGAGGACA GTGGGTGGAG TTTCGTATTT GGAAATTAGA
 AGACCTGGAG TTTCCATTAC ACCGAATTGG CACTTAATAA CTGTTGTCGG AGCATTTCTT
 AAGCCACATT TTCGTAAAGT GGCTTTAAAA TTGCTCTGCC AGTAGGCAGG TTGCTAAGAT
 GGTCAGAGAC AAACTTCTGA ACGACTCTTG TAAAATATAC AGAAATATTT TCAGAACTTT
 TATCAGTAAA ATTAC

  Submitted Frequency for ss32469339 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90172A=0.99418598
G=0.00581400
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469339 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90172172A=0.99418604
G=0.00581395A/A=0.98837209
A/G=0.01162791
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469339 back to top
There is no individual genotype data for ss32469339.

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