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Submitted SNP(ss) Details: ss32469341           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-002443
RefSNP(rs#)rs17880795
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize172
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469341|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 AGAAGGTAGC CTTGAACAGA GGTCCTTTTC CTCCTCCTAA GCTCCGGGAG CCAGAGGTTT
 AACTGACCCT TTTGGGGATT TTTGAGGGCA GTGATCTTAA CTTTGGGTGC ACAGTTAGCT
 TATTTGAAGA TCTTACTAAA AATACACCAG AGCCCAACCT CCGACCAATT ACATCAAAAC
 CTGTCCTAGT GCAGGGTGAG TATTGCTGTT TTTTGAAAGT TTCCAAAAGT GATTTTGATG
 TGCACCTACG ATTGA
 S
 AACTGTCGTT TGAGGACAGT GGGTGGAGTT TCGTATTTGG AAATTAGAAG ACCTGGAGTT
 TCCATTACAC CGAATTGGCA CTTAATAACT GTTGTCGGAG CATTTCTTAA GCCACATTTT
 CGTAAAGTGG CTTTAAAATT GCTCTGCCAG TAGGCAGGTT GCTAAGATGG TCAGAGACAA
 ACTTCTGAAC GACTCTTGTA AAATATACAG AAATATTTTC AGAACTTTTA TCAGTAAAAT
 TACAAAACGT GTTGC

  Submitted Frequency for ss32469341 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90172G=0.99418598
C=0.00581400
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469341 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90172172G=0.99418604
C=0.00581395G/G=0.98837209
C/G=0.01162791
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469341 back to top
There is no individual genotype data for ss32469341.

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