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Submitted SNP(ss) Details: ss32469343           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-003060
RefSNP(rs#)rs17880326
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize162
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469343|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 TATACGAATG AGATTCAGTC TTTAAAGGGG TTTACAGAAA CGTGAGAGGA CAGGAACAGT
 TAGTCTGTGT AAATGTCTGA AATATATGTG AGGGAGATAA TGAGTTTAGC CTTTTTCTTT
 AATAGGTCTC CAGATTTTCT GGAAAAGGTT CTTTGGCATT TGACTCCATT TTGCTGTTTC
 ATTTGTCAGA CTTCTTTTTG TCCCTCTTTA CTTCTCCCCA CATAATTCAC CAGTACTAGT
 GTTTTGTTTT TCAGA
 S
 CAAGTCTCGC TCTGTCGCCC AGGCTGGAGT GCAGTGGCGC GATCTCAGCT CACTGCAACC
 TCCGCCTCCC AGGTTCAAGC AATTCTCCTG CCTCAGCCTC CCGGGTAGCT GGGACTACAG
 GCGCGCGCCG CCACGCCTGG CTAATTTTTT ATATTTTAGT AGAGACGGCG TTTCACCATG
 TTGGCCAGGA TGGTCTCGAT CTGTTGACGT CGTGATCCAC CCGCCTCGGC CTCCCAAAGT
 GCTGGGATTA CAGGC

  Submitted Frequency for ss32469343 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90162C=0.99382699
G=0.00617300
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469343 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90162162C=0.99382716
G=0.00617284C/C=0.98765433
C/G=0.01234568
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469343 back to top
There is no individual genotype data for ss32469343.

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