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Submitted SNP(ss) Details: ss32469346           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-003189
RefSNP(rs#)rs17882967
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize164
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469346|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 CCAGATTTTC TGGAAAAGGT TCTTTGGCAT TTGACTCCAT TTTGCTGTTT CATTTGTCAG
 ACTTCTTTTT GTCCCTCTTT ACTTCTCCCC ACATAATTCA CCAGTACTAG TGTTTTGTTT
 TTCAGACCAA GTCTCGCTCT GTCGCCCAGG CTGGAGTGCA GTGGCGCGAT CTCAGCTCAC
 TGCAACCTCC GCCTCCCAGG TTCAAGCAAT TCTCCTGCCT CAGCCTCCCG GGTAGCTGGG
 ACTACAGGCG CGCGC
 Y
 GCCACGCCTG GCTAATTTTT TATATTTTAG TAGAGACGGC GTTTCACCAT GTTGGCCAGG
 ATGGTCTCGA TCTGTTGACG TCGTGATCCA CCCGCCTCGG CCTCCCAAAG TGCTGGGATT
 ACAGGCGTGA GCCACCCCGC CCGGCCACCA GTGCTATTCT TAAGACGCCT CTGAGGAATC
 CCTTCTCCCT GGCCATTGAG AATCCATGCA TGAACCCAGG TTTTCCACCT TCCCTGAGCA
 GCTTGCATAG TTCCT

  Submitted Frequency for ss32469346 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90164C=0.99390203
T=0.00609800
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469346 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90164164C=0.99390244
T=0.00609756C/C=0.98780489
C/T=0.01219512
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss32469346 back to top
There is no individual genotype data for ss32469346.

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