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Submitted SNP(ss) Details: ss32469347           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-003443
RefSNP(rs#)rs17883270
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469347|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 CCGCCACGCC TGGCTAATTT TTTATATTTT AGTAGAGACG GCGTTTCACC ATGTTGGCCA
 GGATGGTCTC GATCTGTTGA CGTCGTGATC CACCCGCCTC GGCCTCCCAA AGTGCTGGGA
 TTACAGGCGT GAGCCACCCC GCCCGGCCAC CAGTGCTATT CTTAAGACGC CTCTGAGGAA
 TCCCTTCTCC CTGGCCATTG AGAATCCATG CATGAACCCA GGTTTTCCAC CTTCCCTGAG
 CAGCTTGCAT AGTTC
 S
 TTCTTTTAAG CGCCTGACTT CGTTTTGTTT GGTGCCCGTT GTACCTGAGA ATGAGCCTTG
 GATAGTGGAG CATTCCAGCT TTCCAGATAT GCAGAGATAA TACATTGGCT ATCAGCTACT
 TGGCTTGGCC TATTCCGTGT TTAAAATCTT GGACTCTTTG CTAGTTTTTA CAGATCAGAA
 TTTTTCACGT ATTAATCCAG TTTTCCTAGC TTCTCTTGAA GAATTTTTGG AGATCTCTTC
 ATACTGAGCC TTCAT

  Submitted Frequency for ss32469347 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180C=0.99444401
G=0.00555600
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469347 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180C=0.99444443
G=0.00555556C/C=0.98888886
C/G=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469347 back to top
There is no individual genotype data for ss32469347.

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