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Submitted SNP(ss) Details: ss32469348           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-003464
RefSNP(rs#)rs17878802
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469348|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 TTATATTTTA GTAGAGACGG CGTTTCACCA TGTTGGCCAG GATGGTCTCG ATCTGTTGAC
 GTCGTGATCC ACCCGCCTCG GCCTCCCAAA GTGCTGGGAT TACAGGCGTG AGCCACCCCG
 CCCGGCCACC AGTGCTATTC TTAAGACGCC TCTGAGGAAT CCCTTCTCCC TGGCCATTGA
 GAATCCATGC ATGAACCCAG GTTTTCCACC TTCCCTGAGC AGCTTGCATA GTTCCTTCTT
 TTAAGCGCCT GACTT
 S
 GTTTTGTTTG GTGCCCGTTG TACCTGAGAA TGAGCCTTGG ATAGTGGAGC ATTCCAGCTT
 TCCAGATATG CAGAGATAAT ACATTGGCTA TCAGCTACTT GGCTTGGCCT ATTCCGTGTT
 TAAAATCTTG GACTCTTTGC TAGTTTTTAC AGATCAGAAT TTTTCACGTA TTAATCCAGT
 TTTCCTAGCT TCTCTTGAAG AATTTTTGGA GATCTCTTCA TACTGAGCCT TCATTAGCCC
 AGGACAGTAC TGCTG

  Submitted Frequency for ss32469348 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180C=0.97777802
G=0.02222200
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469348 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180C=0.97777778
G=0.02222222C/C=0.95555556
C/G=0.04444445
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469348 back to top
There is no individual genotype data for ss32469348.

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