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Submitted SNP(ss) Details: ss32469350           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-004072
RefSNP(rs#)rs17880208
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize180
PopulationPDR90
Allele
Observed Allele-/TGT
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469350|allelePos=256|len=511|taxid=9606|alleles='-/TGT'|mol=Genomic
 ATGTCCTGAA TGTATTACCG GTTAAATGGA GGTTTCAAAG AACCTGCTGT TTTTGGCCCT
 GTGCTCTTGA TAACAGAGTG TTTGAGGGAC AACTTTCACA TTTGAGTTTT TCCAAAATTA
 AAGGTTGTAG AAGAGTCACA GTATCTATTG TCAAAAAGAA AAGAATTTAA AAAGGCAGCA
 ATTGCCAGGA TACTTCATTT GAGCAATGAT ATTTTCCAGT GGAAAGTCAC ATCTTAAGGG
 TTAATGCCCC TTAAC
 N
 TGGCCGTATT TGAAAACAAA CCAAGCTAAA AACAAGAGAC ACTGACATGT TGTATGACGG
 TGTGGTGTGG ATGTTGTGTT TATTTTAGTC CTGAGATCTA GTTGTAACTT CCTTGATTTC
 TGTATGTAGC CACGGAGCAC CATTACCTGT CACCATTACC TGAATGGCTA TACTGCTTGC
 TTTCATTTTG GTAGAGTGGA AAGGTTACCT AGGTTTCAGT GCTTGAAAAG ATTTCAGAAA
 GCAGTAGTAC GTCTG

  Submitted Frequency for ss32469350 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90180TGT=0.99444401
-=0.00555600
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469350 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90180180TGT=0.99444443
-=0.00555556TGT/TGT=0.98888886
-/TGT=0.01111111
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469350 back to top
There is no individual genotype data for ss32469350.

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