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Submitted SNP(ss) Details: ss32469351           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-004253
RefSNP(rs#)rs4998557
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469351|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TTGCCAGGAT ACTTCATTTG AGCAATGATA TTTTCCAGTG GAAAGTCACA TCTTAAGGGT
 TAATGCCCCT TAACTGTTGG CCGTATTTGA AAACAAACCA AGCTAAAAAC AAGAGACACT
 GACATGTTGT ATGACGGTGT GGTGTGGATG TTGTGTTTAT TTTAGTCCTG AGATCTAGTT
 GTAACTTCCT TGATTTCTGT ATGTAGCCAC GGAGCACCAT TACCTGTCAC CATTACCTGA
 ATGGCTATAC TGCTT
 R
 CTTTCATTTT GGTAGAGTGG AAAGGTTACC TAGGTTTCAG TGCTTGAAAA GATTTCAGAA
 AGCAGTAGTA CGTCTGGTTA GACTAGAATC AGTCCTCTCC TGGGGGCAGT GGAATATAAT
 ATTTTCTGAC TGCTAATTAA AAATACCTGT GATAGCCGGG CGTGGTGGCT TACGCCTGTA
 ATCCCAGCAC TTTGGGAGGC CGAGACGGGT GGATCACGAG GTCAGCAGAT GGAGACCATC
 CTGGCTAACA CGGTG

  Submitted Frequency for ss32469351 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90176G=0.74431801
A=0.25568199
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469351 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90176176G=0.74431819
A=0.25568181G/G=0.54545456
A/G=0.39772728
A/A=0.05681818
Pr(chiSq=0.178,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss32469351 back to top
There is no individual genotype data for ss32469351.

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