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Submitted SNP(ss) Details: ss32469352           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-004308
RefSNP(rs#)rs17880227
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469352|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 AGGGTTAATG CCCCTTAACT GTTGGCCGTA TTTGAAAACA AACCAAGCTA AAAACAAGAG
 ACACTGACAT GTTGTATGAC GGTGTGGTGT GGATGTTGTG TTTATTTTAG TCCTGAGATC
 TAGTTGTAAC TTCCTTGATT TCTGTATGTA GCCACGGAGC ACCATTACCT GTCACCATTA
 CCTGAATGGC TATACTGCTT GCTTTCATTT TGGTAGAGTG GAAAGGTTAC CTAGGTTTCA
 GTGCTTGAAA AGATT
 K
 CAGAAAGCAG TAGTACGTCT GGTTAGACTA GAATCAGTCC TCTCCTGGGG GCAGTGGAAT
 ATAATATTTT CTGACTGCTA ATTAAAAATA CCTGTGATAG CCGGGCGTGG TGGCTTACGC
 CTGTAATCCC AGCACTTTGG GAGGCCGAGA CGGGTGGATC ACGAGGTCAG CAGATGGAGA
 CCATCCTGGC TAACACGGTG AAACCCCGTC TCTACTAAAA ATGCAAAAAA ATTAGCCGGG
 TGTGGTGGTG GGCGC

  Submitted Frequency for ss32469352 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90176T=0.99431801
G=0.00568200
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469352 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90176176T=0.99431819
G=0.00568182T/T=0.98863637
G/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469352 back to top
There is no individual genotype data for ss32469352.

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