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Submitted SNP(ss) Details: ss32469353           
Submitter
HandleEGP_SNPS
Submitter SNP IDSOD1-005324
RefSNP(rs#)rs17884233
Submitted Batch IDSOD1-PDR90-120104
Submitted DateDec 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPDec 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss32469353|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 ATTCAAAAGT ATTTACTACA TAAATAGGTA CTTACATTAC CTATTTACTG TAATAGTCAA
 AGCCTATGAA GTATCTAACA CTGATGTGTA GGTACTCACT TTGCTTGCCA CTCTATTAGG
 TGCTTTTTAT GTTATTTAAT CATGAAGCCT GGCCACAGGG TGCTTGTGCA TTGAGTGTGG
 GAACAAGATT ACCATCTCCC TTTTGAGGAC ACAGGCCTAG AGCAGTTAAG CAGCTTGCTG
 GAGGTTCACT GGCTA
 S
 AAAGTGGTCA GCCTGGGATT TGGACACAGA TTTTTCCACT CCCAAGTCTG GCTGCTTTTT
 ACTTCACTGT GAGGGGTAAA GGTAAATCAG CTGTTTTCTT TGTTCAGAAA CTCTCTCCAA
 CTTTGCACTT TTCTTAAAGG AAAGTAATGG ACCAGTGAAG GTGTGGGGAA GCATTAAAGG
 ACTGACTGAA GGCCTGCATG GATTCCATGT TCATGAGTTT GGAGATAATA CAGCAGGTGG
 GTGTTGTGCT GTGCT

  Submitted Frequency for ss32469353 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90178G=0.98876399
C=0.01123600
SOD1-PDR90-120104EGP_SNPS


  dbSNP summary of Genotypes for ss32469353 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90178178G=0.98876405
C=0.01123596G/G=0.97752810
C/G=0.02247191
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss32469353 back to top
There is no individual genotype data for ss32469353.

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