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Submitted SNP(ss) Details: ss35031520           
Submitter
HandleABI
Submitter SNP IDhCV10008862
RefSNP(rs#)rs17792917
Submitted Batch IDxplore_hum_chr6_1
Submitted DateJul 19, 2005
Publication CitedN.D.
First entry to dbSNPJul 19 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35031520|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TATCTGTAAC AGTTTACTCT ATGGCTTTAG AGTTCCCTTT AAAATGAAAG TAAAATCATT
 CTGATGGTAT ATAGTATCAT ACCCATCTAC TTTTCTTTAT TTATGTGTCA CAATTACATA
 AATGTACACA CAACCTTCTC TGCCAACAGC ATTTGTACAG TGTGCAGAAA TCTTGAAAAC
 AGCTTTTCTG CCAGGGTTAC CACAATGTCC TATTTATTTT CCACTCAGGC CTGGGAAAGT
 CTACAAAGGA ACACACTAGA AATTTGTGCC AAAACAGCTT AACTTGATTT AAGTCAGCCT
 Y
 CTTTTCATGA TCATTTTTAA AGACTAAATG TCAGTTCCTC CTCAACCTAC TAAAGCGAAC
 TACCTTTTTG TGAAGGACCA TGGTCTTCAG GTGAAAATAG TCTATGGTAG GCAGTTCATG
 TTTGAGGTAA TTTTTGAAGT AAAATGTCCC TAAAGAGGAC TAAATTTACT GCAGAAGAAT
 TGTAGAATTG TCATATGAAG GGAGATTTCA ATACACAAGA AACAATATTT TCTTGTTCCA
 CAACGATGAA GTAATTTGCC AAGTTCAAAA ATGAAATTAT TTAGAAAGAG TTTAGAAATA

  Submitted Frequency for ss35031520 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
AoD_African_American
- NORTH AMERICA 		90C=0.97000003
T=0.03000000
xplore_hum_chr6_1ABI
AoD_Japanese
- EAST ASIA 		90C=0.62000000
T=0.38000000
xplore_hum_chr6_1ABI
AoD_Chinese
- EAST ASIA 		90C=0.70999998
T=0.28999999
xplore_hum_chr6_1ABI
AoD_Caucasian
- NORTH AMERICA 		92C=0.88000000
T=0.12000000
xplore_hum_chr6_1ABI


  dbSNP summary of Genotypes for ss35031520 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU226226C=0.73893803
T=0.26106194C/C=0.53982300
C/T=0.39823008
T/T=0.06194690
Pr(chiSq=0.117,df=1)
=0.752		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686C=0.68604654
T=0.31395349C/C=0.48837209
C/T=0.39534885
T/T=0.11627907
Pr(chiSq=0.291,df=1)
=0.655		Genotype
Freq.
HapMap-JPT172172C=0.69767439
T=0.30232558C/T=0.48837209
C/C=0.45348838
T/T=0.05813954
Pr(chiSq=2.139,df=1)
=0.150		Genotype
Freq.
HapMap-YRI226226C=0.95575219
T=0.04424779C/C=0.91150445
C/T=0.08849557
Pr(chiSq=0.021,df=1)
=1.000		Genotype
Freq.
HAPMAP-ASW9898C=0.94897962
T=0.05102041C/C=0.89795917
C/T=0.10204082
Pr(chiSq=0.014,df=1)
=1.000		Genotype
Freq.
HAPMAP-CHB8282C=0.60975611
T=0.39024389C/T=0.53658539
C/C=0.34146342
T/T=0.12195122
Pr(chiSq=0.667,df=1)
=0.439		Genotype
Freq.
HAPMAP-CHD168168C=0.72023809
T=0.27976191C/C=0.50000000
C/T=0.44047618
T/T=0.05952381
Pr(chiSq=0.727,df=1)
=0.403		Genotype
Freq.
HAPMAP-GIH176176C=0.69886363
T=0.30113637C/C=0.47727272
C/T=0.44318181
T/T=0.07954545
Pr(chiSq=0.246,df=1)
=0.655		Genotype
Freq.
HAPMAP-LWK178178C=0.91011238
T=0.08988764C/C=0.82022470
C/T=0.17977528
Pr(chiSq=0.149,df=1)
=0.752		Genotype
Freq.
HAPMAP-MEX100100C=0.87000000
T=0.13000000C/C=0.74000001
C/T=0.25999999
Pr(chiSq=0.271,df=1)
=0.655		Genotype
Freq.
HAPMAP-MKK286286C=0.88111889
T=0.11888112C/C=0.76923078
C/T=0.22377622
T/T=0.00699301
Pr(chiSq=0.664,df=1)
=0.439		Genotype
Freq.
HAPMAP-TSI176176C=0.80113637
T=0.19886364C/C=0.64772725
C/T=0.30681819
T/T=0.04545455
Pr(chiSq=0.121,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss35031520 back to top
There is no individual genotype data for ss35031520.

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